Biotechvana

Programming Services

Biological Databases

In the current omics era, biological databases are indispensable for the management and storage of biological and biomedical data, especially those related to NGS projects. At Biotechvana we have an excellent team of programmers specialized in the development of biological databases, intranets, wikis, servers, and web resources, for both the academy and the industry, adapting our developments to any need and/or idea or requirement of our customers.

We would be delighted to realize your web project or database by providing you with the following services:

Dynamic web programming based on most common Frameworks and CMS
Development and implementation of back-end infrastructures using Apache, Java, PHP, and MySQL
Front-end development of web interfaces for querying the database
Migration and/or conversion of databases
Implementation of containers (dockers)
CyberSecurity and assessment in legal requirements
Graphic and corporate design of the web resource or database
Domain administration, hosting, and housing
Technical support for use and management
Infrastructure maintenance and updating service
Storage services (backups) and restoration of lost data
Dissemination on social networks and SEO services

Tailor-made software and pipelines

Our team also has wide experience in software development using different languages such as C#, C++, Java, PHP, Python, Perl, R, and more. If you are looking for customized software for your research, our programming team would be happy to provide you with information on our quotes in developing tailor-made applications.

Some of our most demanded services are:

Ad hoc scripts for specific tasks
Standalone and client Software applications
Customized omic pipelines
Computational simulators
Artificial Intelligence systems
Content management systems
Animal facilities management systems
Customer management systems
LIMS systems

The cost of our programming solutions may vary depending on the software or database project. If you are interested in getting more information about it, please contact us at biotechvana(at)biotechvana.com and we will be glad to organize a personalized meeting with you in order to discuss and evaluate your specific project.

Related publications

Hafez A and 17 co-authors (including Soriano B, Ceprian R, Elsayed. AA, MArtinez G, and llorens C). 2022. RNASeq and VariantSeq applications and Server Side of GPRO suite. ArXiv https://arxiv.org/abs/2202.07473

Martinez-Gonzalez B and 24 co-authors (including llorens C and Soriano B). 2022. SARS-CoV-2 Point Mutation and Deletion Spectra, and Their Association with Different Disease Outcome. BioRxiv.https://doi.org/10.1101/2022.01.10.475768

Gomez-Gonzalez A, Zamora I, Soriano B, Llorens C. 2022. Prototipo de servidor web para el análisis bioinformático de datos de citometría de flujo. BiBi Software Article: 2022-SOFT1, ISSN 1988-7957. https://bioinformatics.biotechvana.com/index.php/article/40

Baquero F, Campos M, Llorens C, Sempere JM. 2021. P systems in the time of COVID-19. J. Membr. Comput. doi: https://doi.org/10.1007/s41965-021-00083-1

Campos M, Sempere JM, Galán JC, Moya A, Llorens C, de-los-Angeles C, Baquero-Artigao F, Cantón R, Baquero F. 2021. Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model, microLife, Volume 2, 2021, uqab011. doi: https://doi.org/10.1093/femsml/uqab011

Hafez A, Futami R, Arastehfar A, Daneshnia F, Miguel A, Roig FJ, Soriano B, Perez-Sánchez J, Boekhout T, Gabaldón T, Llorens C. 2020.SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files, Bioinformatics, 37(11), 1610-1612 https://doi.org/10.1093/bioinformatics/btaa903

Campos M, San Millan A, Sempere JM, Lanza VF, Coque TM, Llorens C, Baquero F. 2020. Simulating the Influence of Conjugative Plasmids Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model. Antimicrobial Agents and Chemotherapy May 2020, AAC.00593-20 http://dx.doi.org/10.1128/AAC.00593-20

Hovhannisyan H, Hafez A, Llorens C, Gabaldon T. 2020. CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies. Bioinformatics. 36(3): 925-927 https://doi.org/10.1093/bioinformatics/btz626

Fouad MM, Hafez A, Hassanien AE. 2019. Optimizing topologies in wireless sensor networks: A comparative analysis between the Grey Wolves and the Chicken Swarm Optimization algorithms. Computer Networks 163, 106882. https://doi.org/10.1016/j.comnet.2019.106882

Pérez-Sánchez J, Naya-Català F, Soriano B, Piazzon MA, Hafez A, Gabaldón T, Llorens C, Sitjà-Bobadilla A, Calduch-Giner J. 2019. Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream. Front. Mar. Sci. 20 https://doi.org/10.3389/fmars.2019.00760

Campos M, Capilla R, Llorens C, Canton R, Moya A, Sempere JM, Coque T, Fernandez-Lanza V, Naya F, Futami R, Baquero F. 2019. Simulating multilevel dynamics of antimicrobial Resistance in a membrane computing Model. MBio 10(1),e02460-18 https://doi.org/10.1128/mBio.02460-18

Baquero F, Campos M, Llorens C, Sempere JM. 2018 A Model of Antibiotic Resistance Evolution Dynamics Through P Systems with Active Membranes and Communication Rules. Enjoying Natural Computing pp 33-34. https://link.springer.com/chapter/10.1007/978-3-030-00265-7_3

Saus E, Willis JR, Pryszcz LP, Hafez A, Llorens C, Himmelbauer H, Gabaldon T. 2018. nextPARS: Parallel probing of RNA structures in Illumina. Published in Advance January 22, 2018, RNA doi: 10.1261/rna.063073.117

Campos M, Llorens C, Sempere JM, Futami R, Rodríguez I, Carrasco P, Capilla R, Latorre A, Coque TM, Moya A AND Baquero F. 2015. A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES). Biology Direct 2015, 10:41.

Bernet GP, Muñoz-Pomer A, Dominguez-Escriba L, Covelli L, Bernad L, Ramasamy S, Futami R, Sempere JM, Moya A and Llorens C. 2011. GyDB Mobilomics: LTR retroelements and integrase-related transposons of the Pea aphid Acyrthosiphon pisum genome. Mobile Genetic Elements 1(2), 0-1. 1-7-2011. Landes Bioscience.

Covelli L, Muñoz-Pomer A, Dominguez-Escriba L, Futami R, Bernet GP, Moya A and Llorens C. 2011. The GyDB collection is now publicly available within the Gypsy Database of Mobile Genetic Elements. Biotechvana bioinformatics:2011-CR1

Muñoz-Pomer A, Futami R, Sempere JM, Moya A, and Llorens C. 2011. CheckAlign 2.0. Biotechvana Bioinformatics: 2011-SOFT1.

Muñoz-Pomer A, Futami R, Covelli L, Domínguez-Escribà L, Bernet GP, Sempere JM, Moya A, and Llorens C. 2011. TIME: a sequence editor for the molecular analysis of large DNA and protein sequence samples. Biotechvana Bioinformatics: 2011-SOFT2.

Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases (2011) Biotechvana Bioinformatics: 2011-SOFT3

Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, Aguilar-Rodríguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, and Moya A. 2011. The Gypsy Database (GyDB) of mobile genetic elements: release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

Llorens C, Futami R, Renaud G, and Moya A. 2009. Bioinformatic Flowchart and Database to Investigate the Origins and Diversity of Clan AA Peptidases. Biology Direct, 4:3

Llorens C, Muñoz-Pomer A, Futami R, and Moya A. 2009. The GyDB Collection of Viral and Mobile Genetic Element Models. In Biotechvana Bioinformatics, CR: GyDB collection V2

Llorens C, Futami R, Bezemer D and Moya A. 2008. The Gypsy Database (GyDB) of mobile genetic elements. Nucleic Acids Research (NAR) 36 (Database Issue):38-46

Llorens C, Futami R, Muñoz-Pomer A, Vicente-Ripolles M, and Moya A. 2008. Introducing Biotechvana Bioinformatics. In Biotechvana Bioinformatics, Intro

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008. The CheckAlign logo-maker application in analyses of both gapped and ungapped DNA and protein alignments. In Biotechvana Bioinformatics, SOFT:CheckAlign

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008. Phylograph: A multifunction java editor for handling phylogenetic trees. In Biotechvana Bioinformatics, SOFT: Phylograph

Llorens C, Futami R, and Moya A. 2008. The GyDB collection: Ty3/Gypsy and Retroviridae LTR retroelements and related nonviral proteins. In Biotechvana Bioinformatics, CR:GyDB collection

Futami R, Llorens C, Vicente-Ripollés M, and Moya A. 2008. The GyDB Package 1.0. In Biotechvana Bioinformatics, DU: GyDB Package

Llorens C, Vicente-Ripollés M, and Moya A. 2008. The Join Alignments Server version 1.0. In Biotechvana Bioinformatics, SCR:JAS

Llorens C, Vicente-Ripollés M, and Moya A. 2008. The Alignment Format Converter Server 1.0 In Biotechvana Bioinformatics SCR: AFC

Llorens C, Futami R, Vicente-Ripolles M, and Moya A. 2008. Biotechvana Search Engine 1.0. In Biotechvana Bioinformatics DU:BSE

Futami R, Llorens C, and Moya A. 2008. Biotechvana Queue Manager 1.0. In Biotechvana Bioinformatics, DU:BQM

Llorens C, Vicente-Ripollés M, and Moya A. 2008. RMXSC server 1.0. In Biotechvana Bioinformatics, SCR: RMXSC

Programming Services

Biological Databases

Tailor-made software and pipelines

Related publications

Biotechvana

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