Beyond Microbial Variability: Disclosing the Functional Redundancy of the Core Gut Microbiota of Farmed Gilthead Sea Bream from a Bayesian Network Perspective

Moroni F, Naya-Català F, Hafez AI, Domingo-Bretón R, Soriano B, Llorens C, Pérez-Sánchez J. 2025.

Microorganisms 2025, 13(1), 198. DOI: 10.3390/microorganisms13010198

Practical Design and Implementation of Virtual Chatbot Assistants for Bioinformatics Based on a NLU Open Framework

Elsayed AA, Hafez AI, Ceprián R, Martínez G, Granados A, Soriano B, Llorens C, Sempere JM. 2024.

Big Data Cogn. Comput. 2024, 8(11), 163. DOI: 10.3390/bdcc8110163

Membrane Computing Simulation of Sexually Transmitted Bacterial Infections in Hotspots of Individuals with Various Risk Behaviors.

Campos M, Galán JC, Rodríguez-Dominguez M, Sempere JM, Llorens C, Baquero F. 2024.

Microbiology Spectrum Vol. 12, No. 2. DOI: 10.1128/spectrum.02728-23

SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach.

Soriano, B, Hafez AI, Naya-Català F, Moroni F, Moldovan RA, Toxqui-Rodríguez S, Piazzon MC, Arnau V, Llorens C, Pérez-Sánchez J. 2023.

Genes, 14, 1650. DOI: 10.3390/genes14081650

Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.

Hafez AI, Soriano B, Elsayed AA, Futami R, Ceprian R, Ramos-Ruiz R, Martinez G, Roig FJ, Torres-Font MA, Naya-Catala F, Calduch-Giner JA, Trilla-Fuertes L, Gamez-Pozo A, Arnau V, Sempere-Luna JM, Perez-Sanchez J, Gabaldon T, Llorens C. 2023.

Genes; 14(2):267.. DOI: 10.3390/genes14020267

Utility of CYP2D6 copy number variants as prognostic biomarker in localized anal squamous cell carcinoma.

Trilla-Fuertes and 27 Co-authors (including Hafez A and Llorens C). 2023.

Cancer Volume 129, Issue 16, Pages 2581-2592. DOI: 10.1002/cncr.34797

Broodstock nutritional programming differentially affects the hepatic transcriptome and genome-wide DNA methylome of farmed gilthead sea bream (Sparus aurata) depending on genetic background.

Naya-Català F, Belenguer A, Montero D,Torrecillas S, Soriano B, Calduch-Giner J, Llorens C, Fontanillas R, Sarih S, Zamorano MJ, Izquierdo M, Pérez-Sánchez J. 2023.

BMC Genomics 24, 670. DOI: 10.1186/s12864-023-09759-7

Vaccine-breakthrough infections with SARS-CoV-2 Alpha mirror mutations in Delta Plus, Iota and Omicron

Martinez-Gonzalez B, and 18 coauthors (Including Llorens C and Soriano B). 2022.

J Clin Invest, Volume 132, Issue 9. DOI: 10.1172/JCI157700

Simulating the efficacy of vaccines on the epidemiological dynamics of SARS-CoV-2 in a membrane computing model.

Campos M, Sempere JM, Galán JC, Moya A, Cantón R, Llorens C, Baquero F. 2022.

microLife, Volume 3, 2022, uqac018. DOI: 10.1093/femsml/uqac018

SARS-CoV-2 Point Mutation and Deletion Spectra and Their Association with Different Disease Outcomes

Martínez-González B, and 25 Coauthors (including Llorens C and Soriano B). 2022.

Microbiology Spectrum, Vol. 10, No. 2". DOI: 10.1128/spectrum.00221-22

SARS-CoV-2 Mutant Spectra at Different Depth Levels Reveal an Overwhelming Abundance of Low Frequency Mutations.

Martínez-González B (and 31 co-authors including Soriano B and Llorens C). 2022.

Pathogens 2022, 11(6), 662. DOI: 10.3390/pathogens11060662

Prototype of a web server for the bioinformatic analysis of flow cytometry data

Gomez-Gonzalez A, Zamora I, Soriano B, Llorens C. 2022.

BiBi Software Article: 2022-SOFT1, ISSN 1988-7957.

Extracellular Vesicles as a New Promising Therapy in HIV Infection

Navarrete-Muñoz MA, Llorens C, Benito JM, Rallon N. 2022.

Front. Immunol., Sec. Vaccines and Molecular Therapeutics, Volume 12 - 2021. DOI: 10.3389/fimmu.2021.811471

Association of Dietary Patterns with MRI Markers of Hepatic Inflammation and Fibrosis in the MAST4HEALTH Study

Amanatidou AI and 21 Coauthors including Llorens C). 2022.

Int. J. Environ. Res. Public Health 2022, 19(2), 971. DOI: 10.3390/ijerph19020971

Biomarkers of caspofungin resistance in Candida albicans isolates: A proteomic approach

Buda de Cesare G, Hafez A, Stead D, Llorens C, Munro C. 2022.

Virulence, Virulence, 13:1, 1005-1018. DOI: 10.1080/21505594.2022.2081291

Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model

Campos M, Sempere JM, Galán JC, Moya A, Llorens C, de-los-Angeles C, Baquero-Artigao F, Cantón R, Baquero F. 2021.

microLife, Volume 2, 2021, uqab011. DOI: 10.1093/femsml/uqab011

Sialotranscriptomics of the argasid tick Ornithodoros moubata along the trophogonic cycle

Oleaga A, Soriano B, Llorens C, Pérez-Sánchez R. 2021.

PLOS Neglected Tropical Diseases 15(2). DOI: 10.1371/journal.pntd.0009105

SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files

Hafez A, Futami R, Arastehfar A, Daneshnia F, Miguel A, Roig FJ, Soriano B, Perez-Sánchez J, Boekhout T, Gabaldón T, Llorens C. 2021.

Bioinformatics, 37(11), 1610-1612. DOI: 10.1093/bioinformatics/btaa903

RNA-seq analysis and gene expression dynamics in the salivary glands of the argasid tick Ornithodoros erraticus along the trophogonic cycle

Pérez-Sánchez R, Carnero-Morán Á, Soriano B, Llorens C, Oleaga A. 2021.

Parasites Vectors 14, 170. DOI: 10.1186/s13071-021-04671-z

P systems in the time of COVID-19

Baquero F, Campos M, Llorens C, Sempere JM. 2021.

J. Membr. Comput., Volume 3, pages 246–257. DOI: 10.1007/s41965-021-00083-1

Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD

Kanoni S (and 29 co-authors including Llorens C). 2021.

Frontiers in Immunology, 12, 1688. DOI: 10.3389/fimmu.2021.683028

Differentially methylated genes in proliferative verrucous leukoplakia reveal potential malignant biomarkers for oral squamous cell carcinoma

Herreros-Pomares A, Llorens C, Soriano B, Bagan L, Moreno A, Calabuig-Fariñas S, Jantus-Lewintre E, Bagan J. 2021.

Oral Oncology, Volume 116,105191. DOI: 10.1016/j.oraloncology.2021.105191

Metagenomics Analysis Reveals an Extraordinary Inner Bacterial Diversity in Anisakids (Nematoda: Anisakidae) L3 Larvae

Arcos SC (and 14 coauthors including Llorens C). 2021.

Microorganisms 9(5):1088. DOI: 10.3390/microorganisms9051088

Effect of Mastiha supplementation on NAFLD: The MAST4HEALTH Randomised

Amerikanou C and 32 coauthors (including Soriano B, Llorens C and Roig FJ). 2021.

Molecular Nutrition Food Research Volume 65, Issue 10, e2001178. DOI: 10.1002/mnfr.202001178

ICTV Virus Taxonomy Profile: Pseudoviridae

Llorens C, Soriano B, Kuprovic M, ICTV Report Consortium. 2021.

Journal of General Virology,102-3. DOI: 10.1099/jgv.0.001563

ICTV Virus Taxonomy Profile: Belpaoviridae 2021

Soriano B, Kuprovic M, Llorens C. 2021.

Journal of General Virology, 102(11). DOI: 10.1099/jgv.0.001688

Description of the genetic variants identified in a cohort of patients diagnosed with localized anal squamous cell carcinoma and treated with panitumumab.

Trilla-Fuertes L, Gámez-Pozo A, Maurel J. (and 19 coauthors, includind Llorens C). 2021.

Scientific Reports 11, 7402. DOI: 10.1038/s41598-021-86966-w

Clonal Candidemia Outbreak by Candida parapsilosis Carrying Y132F in Turkey: Evolution of a Persisting Challenge

Arastehfar A, (and 12 coauthors including Hafez A). 2021.

Front Cell Infect Microbiol;11:676177. DOI: 10.3389%2Ffcimb.2021.676177

Genetic profile and functional proteomics of anal squamous cell carcinoma: proposal for a molecular classification

Trilla-Fuertes L (and 23 Co-authors including Llorens C and Gamez A). 2020.

Mol Cell Proteomics 19(4): 690-700. DOI: 10.1074/mcp.RA120.001954

Increased miR-7641 Levels in Peritoneal Hyalinizing Vasculopathy in Long-Term Peritoneal Dialysis Patients

Díaz R, Sandoval P, Rodrigues-Diez RR, del Peso G, Jiménez-Heffernan JA, Ramos-Ruíz R, Llorens C, Laham G, Alvarez-Quiroga M, López-Cabrera M, Ruiz-Ortega M, Bajo M.A, Selgas R. 2020.

Int. J. Mol. Sci. 2020, 21(16). DOI: 10.3390/ijms21165824

Simulating the Influence of Conjugative Plasmids Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model

Campos M, San Millan A, Sempere JM, Lanza VF, Coque TM, Llorens C, Baquero F. 2020.

Antimicrobial Agents and Chemotherapy Vol. 64, No. 8. DOI: 10.1128/AAC.00593-20

Comprehensive Characterization of the Mutational Landscape in Localized Anal Squamous Cell Carcinoma

Trilla-Fuertes L (and 23 Co-authors including Llorens C and Gamez A). 2020.

Translational Oncology. DOI: 10.1016/j.tranon.2020.100778

Immune expression profile identification in a group of proliferative verrucous leukoplakia patients: a pre-cancer niche for oral squamous cell carcinoma development

Llorens C, Soriano B, Trilla-Fuertes L, Bagan L, Ramos-Ruis R, Gamez-Pozo A, Peña C, Bagan JV. 2020.

Clinical Oral Investigations, Volume 25, pages 2645–2657. DOI: 10.1007/s00784-020-03575-z

ICTV Virus Taxonomy Profile: Metaviridae

Llorens C, Soriano B, Kuprovic M, ICTV Report Consortium. 2020.

Journal of General Virology, 101-11. DOI: 10.1099/jgv.0.001509

Functional characterization of SARS-CoV-2 infection suggests a complex inflammatory response and metabolic alterations

Trilla-Fuertes L, Ramos-Ruiz R, Blanca-Lopez N, Lopez-Camacho E, Martin-Pedraza L, Ryan Murua P, Diaz-Almiron M, Llorens C, Gabaldon T, Moya A, Fresno JA, Gamez-Pozo A. 2020.

BioRxiv. DOI: 10.1101/2020.06.22.164384

Recent increase in the prevalence of fluconazole-non-susceptible Candida tropicalis blood isolates in Turkey: Clinical implication of azole-non-susceptible and fluconazole tolerant phenotypes and genotyping

Arastehfar A, and 18 co-authors (Including Hafez A). 2020.

Frontiers in Microbiology, Sec. Antimicrobials, Resistance and Chemotherapy. Volume 11. DOI: 10.3389/fmicb.2020.587278

Candida tropicalis is the most prevalent yeast species causing candidemia in Algeria: the urgent need for antifungal stewardship and infection control measures

Megri Y, Arastehfar A, Boekhout T, and 7 coauthors (including Hafez A.). 2020.

Antimicrobial Resistance & Infection Control volume 9, Article number: 50. DOI: 10.1186/s13756-020-00710-z

Recent trends in molecular diagnostics of yeast infections: from PCR to NGS

OPATHY Consortium (including Hafez A, and Llorens C), Gabaldon T. 2019.

FEMS microbiology reviews.43(5); 517–547. DOI: 10.1093/femsre/fuz015

Optimizing topologies in wireless sensor networks: A comparative analysis between the Grey Wolves and the Chicken Swarm Optimization algorithms

Fouad MM, Hafez A, Hassanien AE. 2019.

Computer Networks 163, 106882. DOI: 10.1016/j.comnet.2019.106882

A metagenomic study of patients with alveolar osteitis after tooth extraction. A preliminary case-control study

Aguilar-Duran L, Figuereido R, Seminago R, Roig FJ, Llorens C, Valmaseda-Castellon E. F. 2019.

Clinical Oral Investigations, 1-10. DOI: 10.1007/s00784-019-02855-7

Simulating multilevel dynamics of antimicrobial Resistance in a membrane computing Model

Campos M, Capilla R, Llorens C, Canton R, Moya A, Sempere JM, Coque T, Fernandez-Lanza V, Naya F, Futami R, Baquero F. 2019.

MBio 10(1),e02460-18. DOI: 10.1128/mBio.02460-18

Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)

Pérez-Sánchez J, Naya-Català F, Soriano B, Piazzon MA, Hafez A, Gabaldón T, Llorens C, Sitjà-Bobadilla A, Calduch-Giner J. 2019.

Front. Mar. Sci., Sec. Marine Biotechnology and Bioproducts, Volume 6 - 2019. DOI: 10.3389/fmars.2019.00760

CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies

Hovhannisyan H, Hafez A, Llorens C, Gabaldon T. 2019.

Bioinformatics. 36(3): 925-927. DOI: 10.1093/bioinformatics/btz626

Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates

Arastehfar A, Daneshnia F, Hafez A and 13 co-authors. 2019.

Medical Mycology, Volume 58, Issue 6,Pages 766–773. DOI: 10.1093/mmy/myz124

Phylogeny of Vibrio vulnificus from the analysis of the core-genome: implications for intra-species taxonomy

Roig F, Gonzalez-Candelas F, Sanjuan E, Feil E, Fouz B, Llorens C, Baker-Austin C, Oliver J, Danin-Poleg Y, Gibas C, Kashi Y, Gulig PA, Morrison SS, Amaro C. 2018.

Front. Microbiol. 8, 2613. DOI: 10.3389/fmicb.2017.02613

Analysis of the Transcriptome of the Red Seaweed Grateloupia imbricata with Emphasis on Reproductive Potential

Garcia-Jimenez P, Llorens C, Roig FJ, Robina RR. 2018.

Marine Drugs, 16,490. DOI: 10.3390/md16120490

TMEM173 Alternative Spliced Isoforms Modulate Viral Replication through the STING Pathway

Rodríguez-García E, Olagüe C, Ríus-Rocabert S, Ferrero R, Llorens C, Larrea E, Fortes P, Prieto J, González-Aseguinolaza G, Nistal-Villan E. 2018.

ImmunoHorizons, 2,11 pp 363-376. DOI: 10.4049/immunohorizons.1800068

Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

Herrera M, Llorens C, Rodríguez M, Herrera A, Ramos R, Gil B, Candia A, Larriba MJ, Garre P, Earl J, Rodríguez-Garrote M, Caldés T, Bonilla F, Carrato A, García-Barberán V and Peña C. 2018.

Molecular Cancer, 17:114. DOI: 10.1186/s12943-018-0863-4

A Model of Antibiotic Resistance Evolution Dynamics Through P Systems with Active Membranes and Communication Rules

Baquero F, Campos M, Llorens C, Sempere JM. 2018.

Enjoying Natural Computing pp 33-34. DOI: 10.1007/978-3-030-00265-7_3

Ortervirales: A new viral order unifying five families of reverse-transcribing viruses

Krupovic M, Blomberg J, Coffin JM, Dasgupta I, Fan H, Geering AD, Gifford R, Harrach B, Hull R, Johnson W, Kreuze JF, Lindemann D, Llorens C, Lockhart B, Mayer J, Muller E, Olszewski N, Pappu HR, Pooggin M, Richert-Pöggeler KR, Sabanadzovic S, Sanfaçon S, Schoelz JE, Seal S, Stavolone L, Stoye JP, Teycheney PY, Tristem M, Koonin EV, Kuhn JH. 2018.

Journal of Virology. 92:12 5 e00515-18. DOI: 10.1128/JVI.00515-18

nextPARS: Parallel probing of RNA structures in Illumina

Saus E, Willis JR, Pryszcz LP, Hafez A, Llorens C, Himmelbauer H, Gabaldon T. 2018.

RNA. DOI: 10.1261/rna.063073.117

Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns

Llorens C, Arcos SC, Robertson L, Ramos R, Futami R, Soriano B, Ciordia S, Careche M, González-Muñoz M, Jiménez-Ruiz Y, Carballeda-Sangiao N, Moneo I, Albar JP, Blaxter M and Navas A. 2018.

BMC Genomics 19:592. DOI: 10.1186/s12864-018-4970-9

Microbiota Analysis of Biofilms on Experimental Abutments Mimicking Dental Implants: An in Vivo Model

Cortés-Acha B, Figueiredo R, Seminago R, Roig FJ, Llorens C, Valmaseda-Castellón E. 2017.

Journal of Periodontology 01-20. DOI: 10.1902/jop.2017.170051

New Insights into the Genome Organization of Yeast Killer Viruses Based on “Atypical” Killer Strains Characterized by High-Throughput Sequencing

Ramirez M, Velázquez R, López-Piñeiro A, Naranjo B, Roig F and Llorens C. 2017.

Toxins 2017, 9(9), 292. DOI: 10.3390/toxins9090292

Genome of wild olive and the evolution of oil biosynthesis

Unver T, Wu Z, Sterck L, Turktas M, Lohaus R, Li Z, Yang M, He L, Deng T, Escalante FJ, Llorens C, Roig FJ, Parmaksiz I, Dundar E, Xie F, Zhang B, Ipek A, Uranbey S, Erayman M, Ilhan E, Badad O, Ghazal H, Lightfoot DA, Kasarla P, Colantonio V, Tombologlu H, Hernandez P, Mete N, Cetin O, Van Montagu M, Yang H, Gao Q, Dorado G, and Van de Peer Y. 2017.

Proc. Natl. Acad. Sci. USA. 2017, 114, 44: E9413-E9422. DOI: 10.1073/pnas.1708621114

Gut Bacterial Community of the Xylophagous Cockroaches Cryptocercus punctulatus and Parasphaeria boleiriana

Berlanga M, Llorens C, Comas J, Guerrero R. 2016.

PLoS ONE 11(4): e0152400. DOI: 10.1371/journal.pone.0152400

Metagenómica y filogenia de los tapetes microbianos del Parque Natural de La Camarga (Delta del Ródano, Francia)

Berlanga M, LLorens C, Umeneta J, Guerrero-Moreno R. 2015.

Avances en Microbiologia, Elena González Fandos, Universidad de la Rioja (ed. lit.),ISBN 978-84-606-8181-6, pág. 188.

A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES)

Campos M, Llorens C, Sempere JM, Futami R, Rodríguez I, Carrasco P, Capilla R, Latorre A, Coque TM, Moya A AND Baquero F. 2015.

Biology Direct 2015, 10:41. DOI: 10.1186/s13062-015-0070-9

Los elementos geneticos moviles en la celula tumoral: El despertar de un gigante

Carmona bayonas A, Luengo Gil G, Fong Puig CA, Llorens C. 2013.

REVISTA EUBACTERIA (NOVIEMBRE 2013) Nº32 / ISSN-1697-0071.

On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain

Llorens C, Bernet GP, Ramasamy S, Feschotte C, Moya A. 2012.

Mobile Genetic Elements 2(5). DOI: 10.4161/mge.22914

TIME: a sequence editor for the molecular analysis of large DNA and protein sequence samples

Muñoz-Pomer A, Futami R, Covelli L, Domínguez-Escribà L, Bernet GP, Sempere JM, Moya A, and Llorens C. 2011.

Biotechvana Bioinformatics: 2011-SOFT2.

The GyDB collection is now publicly available within the Gypsy Database of Mobile Genetic Elements

Covelli L, Muñoz-Pomer A, Dominguez-Escriba L, Futami R, Bernet GP, Moya A and Llorens C. 2011.

Biotechvana bioinformatics:2011-CR1.

GyDB Mobilomics: LTR retroelements and integrase-related transposons of the Pea aphid Acyrthosiphon pisum genome

Bernet GP, Muñoz-Pomer A, Dominguez-Escriba L, Covelli L, Bernad L, Ramasamy S, Futami R, Sempere JM, Moya A AND Llorens C. 2011.

Mobile Genetic Elements 1(2), 0-1. 1-7-2011. Landes Bioscience.. DOI: 10.4161/mge.1.2.17635

GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases

Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. 2011.

Biotechvana Bioinformatics: 2011-SOFT3.

CheckAlign 2.0

Muñoz-Pomer A, Futami R, Sempere JM, Moya A, and Llorens C. 2011.

Biotechvana Bioinformatics: 2011-SOFT1..

Database (GyDB) of mobile genetic elements: release 2.0

Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, Aguilar-Rodríguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, and Moya A. 2010.

Nucleic Acids Research, Volume 39, Issue suppl_1, 1 January 2011, Pages D70–D74. DOI: 10.1093/nar/gkq1061

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

THE INTERNATIONAL APHID GENOMICS CONSORTIUM (including Llorens C and Futami R). 2010.

PLoS Biol.. DOI: 10.1371/journal.pbio.1000313

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

Llorens C, Muñoz-Pomer A, Bernad L, Botella H, and Moya A. 2009.

Biology Direct, 4:41. DOI: 10.1186/1745-6150-4-41

The GyDB Collection of Viral and Mobile Genetic Element Models

Llorens C, Muñoz-Pomer A, Futami R, and Moya A. 2009.

Biotechvana Bioinformatics, CR: GyDB collection V2.

Bioinformatic Flowchart and Database to Investigate the Origins and Diversity of Clan AA Peptidases

Llorens C, Futami R, Renaud G, and Moya A. 2009.

Biology Direct 4:3. DOI: 10.1186/1745-6150-4-3

The GyDB collection: Ty3/Gypsy and Retroviridae LTR retroelements and related nonviral proteins

Llorens C, Futami R, and Moya A. 2008.

Biotechvana Bioinformatics, CR:GyDB collection.

Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis

Llorens C, Fares MA, and Moya A. 2008.

BMC Evolutionary Biology volume 8, Article number: 276. DOI: 10.1186/1471-2148-8-276

Biotechvana Search Engine 1.0

Llorens C, Futami R, Vicente-Ripolles M, and Moya A. 2008.

Biotechvana Bioinformatics DU:BSE.

RMXSC server 1.0

Llorens C, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics, SCR: RMXSC.

Biotechvana Queue Manager 1.0

Futami R, Llorens C, and Moya A. 2008.

Biotechvana Bioinformatics, DU:BQM.

Phylograph: A multifunction java editor for handling phylogenetic trees

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics, SOFT: Phylograph.

The Join Alignments Server version 1.0

Llorens C, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics, SCR:JAS.

Introducing Biotechvana Bioinformatics

Llorens C, Futami R, Muñoz-Pomer A, Vicente-Ripolles M, and Moya A. 2008.

Biotechvana Bioinformatics, Intro.

The GyDB Package 1.0

Futami R, Llorens C, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics, DU: GyDB Package.

The CheckAlign logo-maker application in analyses of both gapped and ungapped DNA and protein alignments

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics, SOFT:CheckAlign.

The Alignment Format Converter Server 1

Llorens C, Vicente-Ripollés M, and Moya A. 2008.

Biotechvana Bioinformatics SCR: AFC.

The Gypsy Database (GyDB) of mobile genetic elements

Llorens C, Futami R, Bezemer D and Moya A. 2007.

Nucleic Acids Research, Volume 36, Issue suppl_1, 1 January 2008, Pages D38–D4. DOI: 10.1093/nar/gkm697

A mammalian gene evolved from the Integrase domain of an LTR-retrotransposon

Llorens C and Marin I. 2001.

Molecular Biology and Evolution. 18 (8): 1597-1600. DOI: 10.1093/oxfordjournals.molbev.a003947

Ty3/Gypsy Retrotransposons: Description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data

Marin I and Llorens C. 2000.

Molecular Biology and Evolution. 17(7): 1040-1049. DOI: 10.1093/oxfordjournals.molbev.a026385