2024

Elsayed AA, Hafez AI, Ceprián R, Martínez G, Granados A, Soriano B, Llorens C, Sempere JM. Practical Design and Implementation of Virtual Chatbot Assistants for Bioinformatics Based on a NLU Open Framework. Big Data and Cognitive Computing. 2024; 8(11):163. https://doi.org/10.3390/bdcc8110163

Campos M, Galán JC, Rodríguez-Dominguez M, Sempere JM, Llorens C, Baquero F. 2024. Membrane Computing Simulation of Sexually Transmitted Bacterial Infections in Hotspots of Individuals with Various Risk Behaviors. Microbiology Spectrum, https://doi.org/10.1128/spectrum.02728-23

2023

Naya-Català F, Belenguer A, Montero D,Torrecillas S, Soriano B, Calduch-Giner J, Llorens C, Fontanillas R, Sarih S, Zamorano MJ, Izquierdo M, Pérez-Sánchez J. 2023. Broodstock nutritional programming differentially affects the hepatic transcriptome and genome-wide DNA methylome of farmed gilthead sea bream (Sparus aurata) depending on genetic background. BMC Genomics, 24, 670. https://doi.org/10.1186/s12864-023-09759-7

Soriano, B, Hafez AI, Naya-Català F, Moroni F, Moldovan RA, Toxqui-Rodríguez S, Piazzon MC, Arnau V, Llorens C, Pérez-Sánchez J. 2023. SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach. Genes, 14, 1650. https://doi.org/10.3390/genes14081650 

Trilla-Fuertes and 27 Co-authors (including Hafez A and Llorens C). 2023.Utility of CYP2D6 copy number variants as prognostic biomarker in localized anal squamous cell carcinoma. Cancer.https://doi.org/10.1002/cncr.34797

Hafez AI, Soriano B, Elsayed AA, Futami R, Ceprian R, Ramos-Ruiz R, Martinez G, Roig FJ, Torres-Font MA, Naya-Catala F, Calduch-Giner JA, Trilla-Fuertes L, Gamez-Pozo A, Arnau V, Sempere-Luna JM, Perez-Sanchez J, Gabaldon T, Llorens C. 2023. Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite. Genes; 14(2):267. https://doi.org/10.3390/genes14020267  

2022

Campos M, Sempere JM, Galán JC, Moya A, Cantón R, Llorens C, Baquero F. 2022. Simulating the efficacy of vaccines on the epidemiological dynamics of SARS-CoV-2 in a membrane computing model, microLife, Volume 3,, uqac018, https://doi.org/10.1093/femsml/uqac018

Martínez-González B (and 31 co-authors including Soriano B and Llorens C). 2022.SARS-CoV-2 Mutant Spectra at Different Depth Levels Reveal an Overwhelming Abundance of Low Frequency Mutations. Pathogens, 11, 662. https://doi.org/10.3390/pathogens11060662

Buda de Cesare G, Hafez A, Stead D, Llorens C, Munro C. 2022. Biomarkers of caspofungin resistance in Candida albicans isolates: A proteomic approach. Virulence, Virulence, 13:1, 1005-1018, https://doi.org/10.1080/21505594.2022.2081291

Martínez-González B, and 25 Coauthors (including Llorens C and Soriano B). 2022. SARS-CoV-2 Point Mutation and Deletion Spectra and Their Association with Different Disease Outcomes. Microbiol Spectr. https://doi.org/10.1128/spectrum.00221-22 

Martinez-Gonzalez B, and 18 coauthors (Including Llorens C and Soriano B). 2022. Vaccine-breakthrough infections with SARS-CoV-2 Alpha mirror mutations in Delta Plus, Iota and Omicron. J Clin Invest. https://doi.org/10.1172/JCI157700

Amanatidou AI and 21 Coauthors including Llorens C). 2022.Association of Dietary Patterns with MRI Markers of Hepatic Inflammation and Fibrosis in the MAST4HEALTH Study. Int. J. Environ. Res. Public Health 19(2), 971 https://doi.org/10.3390/ijerph19020971

Gomez-Gonzalez A, Zamora I, Soriano B, Llorens C. 2022. Prototipo de servidor web para el análisis bioinformático de datos de citometría de flujo. BiBi Software Article: 2022-SOFT1, ISSN 1988-7957. https://bioinformatics.biotechvana.com/index.php/article/40

Navarrete-Muñoz MA, Llorens C, Benito JM, Rallon N. 2022. Extracellular Vesicles as a New Promising Therapy in HIV Infection. Front. Immunol., 04 January 2022. https://doi.org/10.3389/fimmu.2021.811471

2021

Soriano B, Kuprovic M, Llorens C. ICTV Report Consortium. 2021. ICTV Virus Taxonomy Profile: Belpaoviridae 2021.Journal of General Virology,102-11. https://doi.org/10.1099/jgv.0.001688

Baquero F, Campos M, Llorens C, Sempere JM. 2021. P systems in the time of COVID-19. J. Membr. Comput. doi: https://doi.org/10.1007/s41965-021-00083-1

Campos M, Sempere JM, Galán JC, Moya A, Llorens C, de-los-Angeles C, Baquero-Artigao F, Cantón R, Baquero F. 2021. Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model, microLife, Volume 2, 2021, uqab011. doi: https://doi.org/10.1093/femsml/uqab011

Herreros-Pomares A, Llorens C, Soriano B, Zhang F, Gallach S, Bagan L, Murillo J, Jantus-Lewintre E, Bagan J. 2021. Oral microbiome in Proliferative Verrucous Leukoplakia exhibits loss of diversity and enrichment of pathogens, Oral Oncology, Volume 120,105404.doi: https://doi.org/10.1016/j.oraloncology.2021.105404

Arastehfar A, (and 12 coauthors including Hafez A). 2021.Clonal Candidemia Outbreak by Candida parapsilosis Carrying Y132F in Turkey: Evolution of a Persisting Challenge. Front Cell Infect Microbiol;11:676177.doi: https://dx.doi.org/10.3389%2Ffcimb.2021.676177

Arcos SC (and 14 coauthors including Llorens C). 2021.Metagenomics Analysis Reveals an Extraordinary Inner Bacterial Diversity in Anisakids (Nematoda: Anisakidae) L3 Larvae. Microorganisms 9(5):1088.doi: https://doi.org/10.3390/microorganisms9051088

Kanoni S (and 29 co-authors including Llorens C). 2021. Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD. Frontiers in Immunology, 12, 1688 doi: https://doi.org/10.3389/fimmu.2021.683028

Trilla-Fuertes L, Gámez-Pozo A, Maurel J. (and 19 coauthors, includind Llorens C). 2021. Description of the genetic variants identified in a cohort of patients diagnosed with localized anal squamous cell carcinoma and treated with panitumumab. Sci Rep 11, 7402 doi: https://doi.org/10.1038/s41598-021-86966-w

Llorens C, Soriano B, Navarrete-Muñoz MA, Hafez A, Arnau V, Benito JM, Gabaldon T, Rallon N, Perez-Sanchez J, Kropovic M. 2021.Reverse-transcribing viruses of the families Metaviridae, Belpaoviridae and Pseudoviridae (order Ortervirales). In: Bamford, D.H. and Zuckerman, M. (eds.) Encyclopedia of Virology, 4th Edition, vol. 3, pp. 653-666. Oxford: Academic Press. Elsevier, doi: https://doi.org/10.1016/B978-0-12-809633-8.21514-8

Pérez-Sánchez R, Carnero-Morán Á, Soriano B, Llorens C, Oleaga A. 2021. RNA-seq analysis and gene expression dynamics in the salivary glands of the argasid tick Ornithodoros erraticus along the trophogonic cycle. Parasites Vectors 14, 170. https://doi.org/10.1186/s13071-021-04671-z

Herreros-Pomares A, Llorens C, Soriano B, Bagan L, Moreno A, Calabuig-Fariñas S, Jantus-Lewintre E, Bagan J. 2021. Differentially methylated genes in proliferative verrucous leukoplakia reveal potential malignant biomarkers for oral squamous cell carcinoma, Oral Oncology, Volume 116,105191https://doi.org/10.1016/j.oraloncology.2021.105191

Amerikanou C and 32 coauthors (including Soriano B, Llorens C and Roig FJ). 2021.Effect of Mastiha supplementation on NAFLD: The MAST4HEALTH Randomised, Controlled Trial. Mol Nutr Food Res. Feb 24:e2001178. Epub ahead of print. PMID: 33629536.https://doi.org/10.1002/mnfr.202001178

Oleaga A, Soriano B, Llorens C, Pérez-Sánchez R. 2021. Sialotranscriptomics of the argasid tick Ornithodoros moubata along the trophogonic cycle. PLOS Neglected Tropical Diseases 15(2): e0009105.https://doi.org/10.1371/journal.pntd.0009105

Llorens C, Soriano B, Kuprovic M, ICTV Report Consortium. 2021. ICTV Virus Taxonomy Profile: Pseudoviridae. Journal of General Virology,102-3 https://doi.org/10.1099/jgv.0.001563

Hafez A, Futami R, Arastehfar A, Daneshnia F, Miguel A, Roig FJ, Soriano B, Perez-Sánchez J, Boekhout T, Gabaldón T, Llorens C. 2021.SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files, Bioinformatics, 37(11), 1610-1612 https://doi.org/10.1093/bioinformatics/btaa903

Llorens C, Soriano B, Trilla-Fuertes L, Bagan L, Ramos-Ruis R, Gamez-Pozo A, Peña C, Bagan JV. 2021. Immune expression profile identification in a group of proliferative verrucous leukoplakia patients: a pre-cancer niche for oral squamous cell carcinoma development. Clin Oral Invest.https://doi.org/10.1007/s00784-020-03575-z

2020

Llorens C, Soriano B, Kuprovic M, ICTV Report Consortium. 2020.ICTV Virus Taxonomy Profile: Metaviridae. Journal of General Virology, 101-11 https://doi.org/10.1099/jgv.0.001509

Arastehfar A, and 18 co-authors (Including Hafez A). 2020. Recent increase in the prevalence of fluconazole-non-susceptible Candida tropicalis blood isolates in Turkey: Clinical implication of azole-non-susceptible and fluconazole tolerant phenotypes and genotyping. Frontiers in Microbiology.https://doi.org/10.3389/fmicb.2020.587278

Megri Y, Arastehfar A, Boekhout T, and 7 coauthors (including Hafez A.). 2020.Candida tropicalis is the most prevalent yeast species causing candidemia in Algeria: the urgent need for antifungal stewardship and infection control measures. Antimicrob Resist Infect Control 9, 50.https://doi.org/10.1186/s13756-020-00710-z

Arastehfar A, Daneshnia F, Hafez A and 13 co-authors. 2020. Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates, Medical Mycology, Volume 58, Issue 6,Pages 766–773,https://doi.org/10.1093/mmy/myz124

Díaz R, Sandoval P, Rodrigues-Diez RR, del Peso G, Jiménez-Heffernan JA, Ramos-Ruíz R, Llorens C, Laham G, Alvarez-Quiroga M, López-Cabrera M, Ruiz-Ortega M, Bajo M.A, Selgas R. 2020. Increased miR-7641 Levels in Peritoneal Hyalinizing Vasculopathy in Long-Term Peritoneal Dialysis Patients. Int. J. Mol. Sci. 21 5824. https://doi.org/10.3390/ijms21165824

Trilla-Fuertes L, Ramos-Ruiz R, Blanca-Lopez N, Lopez-Camacho E, Martin-Pedraza L, Ryan Murua P, Diaz-Almiron M, Llorens C, Gabaldon T, Moya A, Fresno JA, Gamez-Pozo A. 2020. Functional characterization of SARS-CoV-2 infection suggests a complex inflammatory response and metabolic alterations. BioRxivhttps://doi.org/10.1101/2020.06.22.164384

Campos M, San Millan A, Sempere JM, Lanza VF, Coque TM, Llorens C, Baquero F. 2020.Simulating the Influence of Conjugative Plasmids Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model. Antimicrobial Agents and Chemotherapy May 2020, AAC.00593-20 http://dx.doi.org/10.1128/AAC.00593-20

Trilla-Fuertes L (and 23 Co-authors including Llorens C and Gamez A). 2020.Comprehensive Characterization of the Mutational Landscape in Localized Anal Squamous Cell Carcinoma. Translational Oncology.https://doi.org/10.1016/j.tranon.2020.100778

Trilla-Fuertes L (and 23 Co-authors including Llorens C and Gamez A). 2020.Genetic profile and functional proteomics of anal squamous cell carcinoma: proposal for a molecular classification. Mol Cell Proteomics 19(4): 690-700https://doi.org/10.1074/mcp.RA120.001954

Hovhannisyan H, Hafez A, Llorens C, Gabaldon T. 2020.CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies. Bioinformatics. 36(3): 925-927https://doi.org/10.1093/bioinformatics/btz626

2019

Aguilar-Duran L, Figuereido R, Seminago R, Roig FJ, Llorens C, Valmaseda-Castellon E. F. 2019.A metagenomic study of patients with alveolar osteitis after tooth extraction. A preliminary case-control study. Clinical Oral Investigations, 1-10 https://doi.org/10.1007/s00784-019-02855-7

Fouad MM, Hafez A, Hassanien AE. 2019. Optimizing topologies in wireless sensor networks: A comparative analysis between the Grey Wolves and the Chicken Swarm Optimization algorithms. Computer Networks 163, 106882.https://doi.org/10.1016/j.comnet.2019.106882

Pérez-Sánchez J, Naya-Català F, Soriano B, Piazzon MA, Hafez A, Gabaldón T, Llorens C, Sitjà-Bobadilla A, Calduch-Giner J. 2019.Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream. Front. Mar. Sci. 20https://doi.org/10.3389/fmars.2019.00760

OPATHY Consortium (including Hafez A, and Llorens C), Gabaldon T. 2019.Recent trends in molecular diagnostics of yeast infections: from PCR to NGS. FEMS microbiology reviews.43(5); 517–547 https://doi.org/10.1093/femsre/fuz015

Campos M, Capilla R, Llorens C, Canton R, Moya A, Sempere JM, Coque T, Fernandez-Lanza V, Naya F, Futami R, Baquero F. 2019.Simulating multilevel dynamics of antimicrobial Resistance in a membrane computing Model. MBio 10(1),e02460-18 https://doi.org/10.1128/mBio.02460-18

2018

Llorens C, Arcos SC, Robertson L, Ramos R, Futami R, Soriano B, Ciordia S, Careche M, González-Muñoz M, Jiménez-Ruiz Y, Carballeda-Sangiao N, Moneo I, Albar JP, Blaxter M and Navas A. 2018.Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns. BMC Genomics 19:592. https://doi.org/10.1186/s12864-018-4970-9

Rodríguez-García E, Olagüe C, Ríus-Rocabert S, Ferrero R, Llorens C, Larrea E, Fortes P, Prieto J, González-Aseguinolaza G, Nistal-Villan E.2018TMEM173 Alternative Spliced Isoforms Modulate Viral Replication through the STING Pathway. ImmunoHorizons, 2,11 pp 363-376. http://www.immunohorizons.org/content/2/11/363

Garcia-Jimenez P, Llorens C, Roig FJ, Robina RR.2018Analysis of the Transcriptome of the Red Seaweed Grateloupia imbricata with Emphasis on Reproductive Potential. Marine Drugs, 16,490. https://www.mdpi.com/1660-3397/16/12/490

Baquero F, Campos M, Llorens C, Sempere JM. 2018A Model of Antibiotic Resistance Evolution Dynamics Through P Systems with Active Membranes and Communication Rules. Enjoying Natural Computing pp 33-34. https://link.springer.com/chapter/10.1007/978-3-030-00265-7_3

Herrera M, Llorens C, Rodríguez M, Herrera A, Ramos R, Gil B, Candia A, Larriba MJ, Garre P, Earl J, Rodríguez-Garrote M, Caldés T, Bonilla F, Carrato A, García-Barberán V and Peña C. 2018.Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer. Molecular Cancer, 17:114 http://doi.org/10.1186/s12943-018-0863-4

Krupovic M, Blomberg J, Coffin JM, Dasgupta I, Fan H, Geering AD, Gifford R, Harrach B, Hull R, Johnson W, Kreuze JF, Lindemann D, Llorens C, Lockhart B, Mayer J, Muller E, Olszewski N, Pappu HR, Pooggin M, Richert-Pöggeler KR, Sabanadzovic S, Sanfaçon S, Schoelz JE, Seal S, Stavolone L, Stoye JP, Teycheney PY, Tristem M, Koonin EV, Kuhn JH. 2018.Ortervirales: A new viral order unifying five families of reverse-transcribing viruses. Journal of Virology. 92:12 5 e00515-18http://doi.org/10.1128/JVI.00515-18

Saus E, Willis JR, Pryszcz LP, Hafez A, Llorens C, Himmelbauer H, Gabaldon T. 2018.nextPARS: Parallel probing of RNA structures in Illumina. Published in Advance January 22, 2018, RNAdoi: 10.1261/rna.063073.117

Roig F, Gonzalez-Candelas F, Sanjuan E, Feil E, Fouz B, Llorens C, Baker-Austin C, Oliver J, Danin-Poleg Y, Gibas C, Kashi Y, Gulig PA, Morrison SS, Amaro C. 2018.Phylogeny of Vibrio vulnificus from the analysis of the core-genome: implications for intra-species taxonomy. Front. Microbiol. 8, 2613;doi: 10.3389/fmicb.2017.02613

2017

Unver T, Wu Z, Sterck L, Turktas M, Lohaus R, Li Z, Yang M, He L, Deng T, Escalante FJ, Llorens C, Roig FJ, Parmaksiz I, Dundar E, Xie F, Zhang B, Ipek A, Uranbey S, Erayman M, Ilhan E, Badad O, Ghazal H, Lightfoot DA, Kasarla P, Colantonio V, Tombologlu H, Hernandez P, Mete N, Cetin O, Van Montagu M, Yang H, Gao Q, Dorado G, and Van de Peer Y. 2017.Genome of wild olive and the evolution of oil biosynthesis Proc. Natl. Acad. Sci. USA. 2017, 114, 44: E9413-E9422,doi:10.1073/pnas.1708621114.

Ramirez M, Velázquez R, López-Piñeiro A, Naranjo B, Roig F and Llorens C. 2017. New Insights into the Genome Organization of Yeast Killer Viruses Based on “Atypical” Killer Strains Characterized by High-Throughput Sequencing.Toxins 9(9), 292; doi:10.3390/toxins9090292

Cortés-Acha B, Figueiredo R, Seminago R, Roig FJ, Llorens C, Valmaseda-Castellón E. 2017. Microbiota Analysis of Biofilms on Experimental Abutments Mimicking Dental Implants: An in Vivo Model. Journal of Periodontology 01-20 :doi:10.1902/jop.2017.170051

2016

Berlanga M, Llorens C, Comas J, Guerrero R. 2016. Gut Bacterial Community of the Xylophagous Cockroaches Cryptocercus punctulatus and Parasphaeria boleiriana.PLoS ONE 11(4): e0152400. doi:10.1371/journal.pone.0152400

2015

Campos M, Llorens C, Sempere JM, Futami R, Rodríguez I, Carrasco P, Capilla R, Latorre A, Coque TM, Moya A AND Baquero F. 2015. A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES).Biology Direct 2015, 10:41.

Berlanga M, LLorens C, Umeneta J, Guerrero-Moreno R. 2015. Metagenómica y filogenia de los tapetes microbianos del Parque Natural de La Camarga (Delta del Ródano, Francia). En Avances en Microbiologia, Elena González Fandos, Universidad de la Rioja (ed. lit.),ISBN 978-84-606-8181-6, pág. 188 href='https://dialnet.unirioja.es/servlet/libro?codigo=571813

2014

Lysøe E, Harris LJ, Walkowiak S, Subramaniam R, Divon HH, Riiser ES, Llorens C, Gabaldón T, Kistler HH, Jonkers W, Kolseth AK, Nielsen KF, Thrane U, and Frandsen RJN. 2014. The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism.PLoS ONE 9(11): e112703. doi:10.1371/journal.pone.0112703

2013

Carmona bayonas A, Luengo Gil G, Fong Puig CA, Llorens C. 2013. Los elementos geneticos moviles en la celula tumoral: El despertar de un gigante.REVISTA EUBACTERIA (NOVIEMBRE 2013) Nº32 / ISSN-1697-0071

2012

Llorens C, Bernet GP, Ramasamy S, Feschotte C, Moya A 2012. On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain.Mobile Genetic Elements 2(5), September-October-2012.

2011

Bernet GP, Muñoz-Pomer A, Dominguez-Escriba L, Covelli L, Bernad L, Ramasamy S, Futami R, Sempere JM, Moya A AND Llorens C. 2011. GyDB Mobilomics: LTR retroelements and integrase-related transposons of the Pea aphid Acyrthosiphon pisum genome.Mobile Genetic Elements 1(2), 0-1. 1-7-2011. Landes Bioscience.

Covelli L, Muñoz-Pomer A, Dominguez-Escriba L, Futami R, Bernet GP, Moya A and Llorens C. 2011. The GyDB collection is now publicly available within the Gypsy Database of Mobile Genetic Elements. Biotechvana bioinformatics:2011-CR1

Muñoz-Pomer A, Futami R, Sempere JM, Moya A, and Llorens C. 2011. CheckAlign 2.0.Biotechvana Bioinformatics: 2011-SOFT1.

Muñoz-Pomer A, Futami R, Covelli L, Domínguez-Escribà L, Bernet GP, Sempere JM, Moya A, and Llorens C. 2011. TIME: a sequence editor for the molecular analysis of large DNA and protein sequence samples.Biotechvana Bioinformatics: 2011-SOFT2.

Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases (2011)Biotechvana Bioinformatics: 2011-SOFT3

Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, Aguilar-Rodríguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, and Moya A. 2011. The Gypsy Database (GyDB) of mobile genetic elements: release 2.0Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

2010

THE INTERNATIONAL APHID GENOMICS CONSORTIUM (including Llorens C and Futami R). 2010 . Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biol, 8(2):e1000313 DOI / ISBN:10.1371/journal.pbio.1000313

2009

Llorens C, Muñoz-Pomer A, Bernad L, Botella H, and Moya A. 2009. Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees.Biology Direct, 4:41

Llorens C, Futami R, Renaud G, and Moya A. 2009. Bioinformatic Flowchart and Database to Investigate the Origins and Diversity of Clan AA Peptidases.Biology Direct, 4:3

Llorens C, Muñoz-Pomer A, Futami R, and Moya A. 2009. The GyDB Collection of Viral and Mobile Genetic Element Models.In Biotechvana Bioinformatics, CR: GyDB collection V2

2008

Llorens C, Futami R, Bezemer D and Moya A. 2008. The Gypsy Database (GyDB) of mobile genetic elements.Nucleic Acids Research (NAR) 36 (Database Issue):38-46

Llorens C, Fares MA, and Moya A. 2008. Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis.BMC Evolutionary Biology, 8:276

Llorens C, Futami R, Muñoz-Pomer A, Vicente-Ripolles M, and Moya A. 2008. Introducing Biotechvana Bioinformatics.In Biotechvana Bioinformatics, Intro

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008. The CheckAlign logo-maker application in analyses of both gapped and ungapped DNA and protein alignments.In Biotechvana Bioinformatics, SOFT:CheckAlign

Llorens C, Futami R, Vicente-Ripollés M, and Moya A. 2008. Phylograph: A multifunction java editor for handling phylogenetic trees.In Biotechvana Bioinformatics, SOFT: Phylograph

Llorens C, Futami R, and Moya A. 2008. The GyDB collection: Ty3/Gypsy and Retroviridae LTR retroelements and related nonviral proteins.In Biotechvana Bioinformatics, CR:GyDB collection

Futami R, Llorens C, Vicente-Ripollés M, and Moya A. 2008. The GyDB Package 1.0.In Biotechvana Bioinformatics, DU: GyDB Package

Llorens C, Vicente-Ripollés M, and Moya A. 2008. The Join Alignments Server version 1.0.In Biotechvana Bioinformatics, SCR:JAS

Llorens C, Vicente-Ripollés M, and Moya A. 2008. The Alignment Format Converter Server 1.0In Biotechvana Bioinformatics SCR: AFC

Llorens C, Futami R, Vicente-Ripolles M, and Moya A. 2008. Biotechvana Search Engine 1.0.In Biotechvana Bioinformatics DU:BSE

Futami R, Llorens C, and Moya A. 2008. Biotechvana Queue Manager 1.0.In Biotechvana Bioinformatics, DU:BQM

Llorens C, Vicente-Ripollés M, and Moya A. 2008. RMXSC server 1.0.In Biotechvana Bioinformatics, SCR: RMXSC

2001

Llorens C and Marin I. 2001. A mammalian gene evolved from the Integrase domain of an LTR-retrotransposon.Molecular Biology and Evolution. 18 (8): 1597-1600

2000

Marin I and Llorens C. 2000. 'Ty3/Gypsy Retrotransposons: Description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data'.Molecular Biology and Evolution. 17(7): 1040-1049