DeNovoSeq
DeNovoSeq is a Client-Desktop Application of the GPRO suite with custom dedication to manage and run pipelines and workflows for de novo reconstruction and annotation of new genome and transcriptome sequences using NGS data and a protocol based on the State-of-the-Art. The application is coupled with an infrastructure of server-side dependencies (pipelines, databases, and tools) that we distribute in a container that can be installed on a remote server or on a PC with sufficient RAM. The application also includes a File Transfer Protocol system (FTP) to facilitate the upload and download of files from the user’s computer to or from the server; a progress tracker (job tracking system), and two different execution modes (a “step-by-step” mode, and a “pipeline-like” mode).
Citing us
If you want to cite GPRO Suite Project:
Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases (2011). Biotechvana Bioinformatics: 2011-SOFT3
