SeqEditor
SeqEditor is a Sequence Browser for the management and analysis of nucleotide and protein sequences of up to 300 megabases. This enables it to manage the largest chromosomes currently known. SeqEditor is an updated version of TIME, a former sequence editor (Muñoz et al. 2011) also implemented as a sequence editor in the former release of GPRO (Futami et al. 2011). The new version provides improved updates of the functions (translation of nucleotide sequences into proteins, editing of sequences, changes in the geometry and orientation of the sequences etc.) and also provides new utilities for the searching and filtering of sequences, ORFs and motifs, managing multiple files simultaneously, primer design, metrics inference, and more.
Citing us
If you want to cite SeqEditor:
Hafez, A., Futami, R., Arastehfar, A., Daneshnia, F., Miguel, A., Roig, F. J., Soriano, B., Pérez-Sánchez, J., Boekhout, T., Gabaldón, T., & Llorens, C. (2021). SeqEditor: An application for primer design and sequence analysis with or without GTF/GFF files. Bioinformatics, 37(11), 1610–1612. https://doi.org/10.1093/bioinformatics/btaa903
If you want to cite GPRO Suite Project:
Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases (2011). Biotechvana Bioinformatics: 2011-SOFT3
