We are constructing this website
Any content (description, text or figure) is a preliminar draft of the final website

Worksheet - Append COG/KOG terms

To do this, it is necessary to have previously mapped your sequences (via BLAST search) to the RefSeq COG and KOG databases integrated in the NCBI Conserved Domain Database (CDD) (Schug et al. 2002) available at the FTP of the NCBI. For details about how to perform a BLAST search, see the section “BLAST and HMM Pipeline”.

Once you have the CSV resulting from the COG/KOG automatic annotation, you can use the Worksheet utility “Annotation” to add COG or KOG terms to your CSV by clicking on the tabs “Append COG terms” (if you are annotating prokaryotic orthologs) or “Append KOG terms” (if you are dealing with eukaryotic orthologs) by choosing the column of reference (“GI”) and the type of data contained in this column (“GI” or “Protein names”). Finally, check the boxes below this dialog to choose the COG/KOG terms you want to append to the worksheet by adding two or three new columns and click OK.

GPRO licensing and Usage   Login

Biotechvana SL

Valencia Lab
Parc Cientific Universitat de Valencia
Calle Catedrático José Beltrán, 2
46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Admin phone: +34 963 543 839
Lab phone: +34 963 543 269
Email: biotechvana@biotechvana.com

Biotechvana © 2017
Privacy policy