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RNASeq - Overview


RNAseq is the GPRO software manager to run a pipeline for differential expression and enrichment analyses of the GPRO server bioinformatic infrastructure installed in remote servers. The application provides wrapper user interface for running and launching the required programs on the remote server. It includes a variety of programs used in different stages of RNAseq analysis starting from raw reads to the final analysis result (e.g. cutadapt/prinseq for preprocessing sequences, tophat/bowtie2 for mapping, etc).

Programs and features of the RNAseq pipeline:

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